PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 470aa    MW: 53060.8 Da    PI: 5.6235
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.51.1e-33181082101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d++++e++sws+ ++sfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++
  XP_015868967.1  18 FLLKTYDMVDDSSTDEIVSWSSVKTSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIKDQKHLLKN 103
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_015868967.1 104 IHRRK 108
                     ***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5914107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3614107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDGAQAAGSG SSGGPAPFLL KTYDMVDDSS TDEIVSWSSV KTSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIKDQKHL LKNIHRRKPI HSHSHPPGTL  120
VDPERAALDD EIEKLSREKA ALESNVSSFQ QQRSAAKLQL GDMLQRVSEM ERRQESLLNF  180
LEKAVQNPIF VERLARKIEA MDFTAYNKKR RLPEVDHPQP VLENNFVDNH ISSRAEFGNI  240
FHQDFSSKLR LELSPAVSDI NLVSHSTQSS NEDGESPHRK VSEGEFRGAQ RTEGLFFPAE  300
ALELSDTGTS FAFKMDSSLS RKSSTNGRPG LQLSQPNLPA NEEGEGRISC HLNLTLASTP  360
LQFNNSPYSA RMPQQGHETS EPQELNKNMH EEEKLLSSSQ EAAKTNQEPV AAPVKVNDVF  420
WEQFLTERPG CSENEEASSN YRANSYDEQD DRKLGHGISR NVKNVEQLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-20710719129Heat shock factor protein 1
5d5v_B2e-20710719129Heat shock factor protein 1
5d5v_D2e-20710719129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868967.10.0PREDICTED: heat stress transcription factor A-5-like
RefseqXP_015870139.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-171HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLB9GFJ00.0B9GFJ0_POPTR; Heat Stress Transcription Factor family protein
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-172HSF family protein